Tag: digitisation

27 year-old fly launches major digitisation project in Scotland

As Scotland’s Climate Week gets underway, a 127 year-old hoverfly is among the first insect specimens to be digitised as part of a major new project led in Scotland by National Museums Scotland and Royal Botanic Garden Edinburgh. 

The specimen is a Pine hoverfly (Blera fallax), which entered the Museum’s collection in 1899. Blera fallax became critically endangered in Scotland and almost disappeared from the wild by the 2000 before successful efforts were made to reintroduce it in the wild in the Cairngorms National Park.  

The DiSSCo UK project in Scotland aims to create approximately 700,000 digital records of specimens held in Scotland’s natural science collections. The project in Scotland will initially run for two years and will see more than 250,000 insects from National Museums Scotland and 388,000 herbarium specimens from the Royal Botanic Garden Edinburgh become digitally accessible to all.  

The value of the project in documenting Scotland’s natural history is illustrated by the way in which plant specimens from the same region are also being digitised by Royal Botanic Garden Edinburgh, such as Scots pine (Pinus sylvestris).

The Scots pine of the Caledonian Forest is a key species for the habitat of the Pine hoverfly, with the insects using rot holes in the trees for the development of their larvae. The specimen in the Herbarium of the Royal Botanic Garden Edinburgh was collected in Aviemore in 1975.  

Dr Vladimir Blagoderov, Principal Curator, Invertebrates at National Museums Scotland, said: “It’s very pleasing to have started work on this important work digitally documenting and making accessible this really useful and valuable information about Scotland’s natural environment and how it has changed and will continue to change over time.” 

DiSSCo UK [https://dissco-uk.org/] (Distributed System of Scientific Collections UK), is a £155 million, 10-year national programme to digitise and connect the UK’s natural science collections.

The programme is funded through the UKRI Infrastructure Fund and delivered by the UKRI Arts and Humanities Research Council (AHRC) in partnership with the Natural History Museum and over 100 partners across the UK.     

In addition to material from the Scottish national collections, the project will also see digital records created for 85,000 plant specimens held by Glasgow Life, 1200 insects from The Hunterian, 2400 specimens from Shetland Museum & Archives including plants, algae and fungi as well as 1400 plant, lichen and moss specimens from The James Hutton Institute in Aberdeen. 

It is hoped that future phases will encompass more of the collections of existing participants and also widen in scope to include more of Scotland’s natural science collecting institutions.    

Botanics’ Herbarium celebrates milestone achievement

The Royal Botanic Garden Edinburgh’s (RBGE) project to digitise its renowned Herbarium collection has reached a significant milestone as it celebrates the digitisation of its one millionth specimen.

The digitisation project aims to bridge the gap between the collection and the public by making data visible on an accessible platform – taking an innovative approach to scientific data sharing.

In line with this commitment to empower learners and share their resources, the Garden invited the Expedition Botanics – Secondary Summer Club, a group of 15–18-year-olds with a budding passion for science, to get behind-the-scenes access to the digitisation process of the millionth specimen.

To celebrate the milestone the Herbarium, which holds an ever-growing collection of over three million specimens, RBGE has digitised a specimen of Stereocaulon vesuvianum. The specimen, which is a species of lichen*, was collected by Dr Rebecca Yahr, Lichenologist at the Garden, during an expedition up Ben Nevis to mark 250 years since the first recorded climb up the historic mountain.

The landmark expedition was part of RBGE’s contribution to the Darwin Tree of Life (DToL) project, a groundbreaking genome-sequencing programme aimed at unlocking DNA sequences of all the species in Great Britain and Ireland.

By examining plant and fungal lineages and their characteristics, the Garden works collaboratively with partner organisations, including the Royal Botanic Gardens, Kew, the Wellcome Sanger Institute, the University of Oxford and the University of Edinburgh, to reflect on plants’ ancestry – plantcestry – uncovering invaluable insight into how life on Earth has evolved and how we can support global biodiversity conservation efforts.

Rebecca Yahr said: “Scotland has an important role in international conservation, particularly for lichens. Celebrating the milestone with this important specimen is an exciting opportunity for us to highlight Scotland’s unique biodiversity and extend RBGE’s mission to research and understand lichens more generally.”

The Garden’s Herbarium is home to species from 157 countries – an impressive scientific collection which was historically hard to access. The digitised platform, which showcases the rich and diverse plant lineage, now sees requests come in from across the globe from students, scientists and plant enthusiasts alike.

Closer to the community, the Garden’s Secondary Summer School had the opportunity to engage with the living collection as well as apply their learnings to the natural world. One of the lucky youngsters, 15-year-old Bernice Nwagu, was selected to digitise the millionth specimen, highlighting the Garden’s commitment to investing in future generations and sparking their curiosity in career paths within the industry.

The vibrant working collection, which traces back 350 years, is being digitised into high-resolution images that can be viewed by anyone with an internet connection. It demonstrates not only Scotland’s biodiversity but details regions around the world where RBGE has worked in partnership with local experts for generations.

Democratising access to reference collections such as the Garden’s provides scientists around the globe with an enriched understanding of the environment in their quest to conserve our fragile habitats.

Leading the digitisation project, Professor Olwen Grace, Deputy Director of Science (Collection) and Curator of the Herbarium said: “Being able to share this information with scientific communities as well as the public allows us to develop a more robust understanding of biodiversity challenges and the solutions that can help us build resilience to shifting climates.

“As biodiversity scientists, it’s both the best and worst time for us to be working. It is far easier to share and translate our work on plant lineages to produce models that demonstrate direct impacts and help us tackle problems at national and global scales; however, the acceleration of climate change means that we are in a race against time.

“At the Royal Botanic Garden Edinburgh, we see it as our moral imperative to share this information, especially when we are facing a global biodiversity crisis.”

As part of the Garden’s commitment to building a positive future for biodiversity and providing access to the collection that represents half to two-thirds of the world’s flora, the digitisation process has followed the ‘FAIR Guiding Principles for scientific data management and stewardship’. This has ensured the data has been standardised in terms of findability, accessibility, interoperability and reusability of digital assets.