New research explores antimicrobial resistance in Scotland’s waters

Research by James Hutton Institute and Heriot-Watt University scientists has carried out the first review of antimicrobial resistance (AMR) in Scotland’s waters.

Antibiotic-resistant bacteria, such as Staphylococcus aureus and Escherichia coli, are a major source of concern for public health. According to the World Health Organisation, new resistance mechanisms continue to emerge and spread globally, threatening our ability to treat common infectious diseases and endangering the achievement of the Sustainable Development Goals set by the United Nations.

Work by Hutton and Heriot-Watt researchers, funded by Scotland’s Centre of Expertise for Waters, considered the available information on antimicrobial resistance in Scotland’s waters and identified emerging monitoring approaches and potential technological solutions for detecting and tackling antimicrobial resistance.

Findings will help policymakers develop solutions for detecting, monitoring and reducing antimicrobial resistance in Scottish waters.

Dr Lisa Avery, a senior environmental microbiologist at the James Hutton Institute’s Environmental and Biochemical Sciences department and co-author of the study, said: “So far, there has not been enough monitoring of antimicrobial resistance in Scotland’s waters to know how widespread or how concentrated the levels of resistant microbes, genes and resistance-driving chemicals are.

“Globally, lots of different methods are used for detecting resistance. The most common ones are to detect antibiotic resistant bacteria by culturing (growing) them and using polymerase chain reaction (PCR) – based methods to detect specific resistance genes. Our study found no consensus on the best detection method.”

Dr Helen Bridle, Associate Professor at the Institute of Biological Chemistry, Biophysics and Bioengineering of Heriot-Watt University added: “A diversity of approaches is needed for research purposes.

“However, if we can develop some guidelines so that those researching or monitoring resistance in waters are encouraged to use at least one or two of the same approaches across all of the different studies, this would help in understanding antimicrobial resistance and how it is linked across humans, animals and the environment.”

At a recent meeting of the Scottish Parliament, Maree Todd MSP, Minister for Public Health, Women’s Health and Sport, said: “We need to recognise that antimicrobial resistance does not affect only humans.

“Bacteria with the potential to become resistant to antibiotics exist in animals and in the environment. For that reason, we require a one health approach to the threat that recognises that the health of people is closely connected to the health of animals and our shared environment.”

The researchers conclude that agreement across methodological approaches and guidance would support technology developers to develop and validate new approaches for detecting antimicrobial resistance, as most current methods are developed for the clinical, rather than environmental field.

It’s hoped that treatment technologies can remove antimicrobial resistance, but cost-benefit analyses are needed to compare different treatment and mitigation strategies.

A spokesperson from SEPA commented: “SEPA welcomes the publication of the Centre of Expertise for Waters’ (CREW) policy briefing, which provides valuable insights to better understanding the risks of AMR in Scotland’s water environment.

“There are many sectors and activities we regulate that have the potential to exacerbate the spread of AMR through the environment, and we are committed to playing our role in understanding and helping to address the issue.

“Through research and multi-agency collaboration we are working to ensure that interventions are developed and implemented in a way that recognises how the health of people is closely and inextricably linked to the health of animals and our shared environment. This includes our involvement in key groups such as the One Heath Breakthrough Partnership and the Scottish One Health National AMR Action Plan Group.”

The policy outputs, including a policy note (Antimicrobial resistance in Scotland’s waters) and policy brief (Technologies for monitoring and treatment of antimicrobial resistance in water), are both available from the CREW website [https://www.crew.ac.uk/publications]. 

Climate change is affecting Scotland’s lochs and reservoirs

Climate change has already caused a rapid and extensive warming of Scotland’s lochs and reservoirs with impacts expected to intensify, research has revealed for the first time.

A report published today by Scotland’s Centre of Expertise for Waters (CREW), shows that between 2015 and 2019, 97% of monitored Scottish lochs and reservoirs have increased in temperature. While most warmed by up to 1.0°C per year over this period, 9% increased by more than that – some by up to 1.3°C per year.

Researchers warn that these changes increase the risk of harmful algal blooms developing, which could restrict their use for recreation and water supply, and as a safe habitat for wildlife.

It is expected that waters in the south and east of Scotland are expected to warm the most at first, but this climate-related impact will reach all parts of the country by 2040.

The report makes a number of recommendations to address these impacts in the immediate term, as well as further research to improve our understanding of climate impacts on the complex functioning of lochs and reservoirs.

Environment Minister Mairi McAllan said: “This important research provides yet more worrying evidence of the risks of harm from climate change on Scotland’s water environment.

“It is vital that we do more to mitigate those impacts, to seek to reduce the pace of warming but also to adapt to it.  We have committed £243 million since 2015 through the Agri-Environment Climate Scheme to support land management practices which protect and enhance Scotland’s natural heritage, improve water quality, manage flood risk and mitigate and adapt to climate change.

“Scotland is renowned worldwide for the quality of our water. Research like this will be hugely valuable in informing the development of policy solutions and measures to mitigate and adapt to climate change, and also protect, restore and enhance these vital natural assets.”

Freshwater ecologist Dr Linda May of the UK Centre for Ecology & Hydrology (UKCEH), lead author of the report, said: “This research has shown, for the first time, that climate change is already warming our lochs and reservoirs in Scotland, and that this trend is likely to continue.

“It provides early warning of the potential impacts of climate change on biodiversity, water supply and recreational use, and highlights the need for mitigation measures to be put in place as quickly as possible.”

Dr Pauline Lang, project manager for CREW, said: “This pioneering research led by experts at the UK Centre for Ecology & Hydrology demonstrates that, without intervention, climate-driven risk is projected to further increase by 2040.  

“To prevent the modelled scenarios becoming reality, we trust the recommendations proposed will enable effective climate action for safeguarding freshwaters now and during the critical decades ahead.

“This project is a great example of how CREW can pivot towards Scotland’s water-related needs by bringing a community of researchers and stakeholders together to collaborate on addressing the most important environmental concerns of this time.”

NatureScot Freshwater and Wetlands Advice Manager Iain Sime said: “Scotland, like the rest of the world, is facing an unprecedented climate emergency. The findings of this comprehensive review are stark, demonstrating the impact that climate change is already having on our freshwater lochs and reservoirs, and their biodiversity.

“The need for urgent action is clear, and at NatureScot we are using the £65m Nature Restoration Fund to prioritise efforts that support the conservation of our lochs and ponds.”

Scottish Environment Protection Agency (SEPA) Senior Ecologist Ian Milne said: “CREW’s report, which used SEPA data from 142 lochs and reservoirs, is important in highlighting some of the climate change pressures Scotland’s environment is facing.

“The findings emphasise the significance of SEPA’s ongoing work to tackle the threats of climate change and biodiversity loss, which is being done in partnership with Scottish Government, local authorities, Scottish Water, environment and community groups, farmers, land managers and others through our River Basin Management Plans.”

Research provides comprehensive view of pharmaceutical pollution of Scotland’s water environment

  • Study to be used to promote positive action on medicine use and disposal, to reduce pharmaceutical pollution
  • Data on 60 medicines in the water environment, known to occur through consumption and inappropriate disposal into wastewater systems, were obtained from a range of sources
  • Nine medicines were recommended for further action to reduce the potential environmental risk

A study carried out by researchers at Glasgow Caledonian University (GCU) with the James Hutton Institute and the Environmental Research Institute (University of the Highlands and Islands) has delivered the first national assessment of the emerging area of concern around pharmaceutical pollution of Scotland’s water environment, with an innovative Scottish partnership using results to promote practical actions to reduce this globally recognised public health and environmental issue.

Pharmaceuticals (medicines) enter the water environment when people taking medicines go to the toilet (between 30-100% of a dose is excreted) and when partially used or expired medicines are inappropriately flushed down the toilet instead of being returned to a pharmacy for proper disposal.

Information on 60 medicines was added to a database of over 3,000 data points representing 11 ‘types of water’ – such as water in the environment, influent wastewater and treated wastewater.

The study, commissioned by the Centre of Expertise for Waters (CREW) to support the work of the One Health Breakthrough Partnership, combined published and unpublished academic data with monitoring data from Scottish Water and SEPA.

Lead researcher Dr Karin Helwig says: “Pharmaceuticals (medicines) are designed to have an effect on humans so it’s no surprise that they affect water organisms, too, and that could disturb the balance in ecosystems.

“There is still much we don’t know about how serious these risks are, but if we value our environment it makes sense to try and reduce this kind of pollution as much as possible.

“Different organisations collect monitoring data for their own different purposes, so it was a real testament to partnership working that we were able to collate everything together and get a clearer picture of this area of emerging concern for the Scottish environment.”

The study found that nine medicines, including ibuprofen (an anti-inflammatory painkiller) and antibiotics, may pose higher risks of ecotoxicity and antimicrobial resistance (AMR), although the authors emphasise that monitoring is often carried out at higher risk locations.

Dangers to human health are extremely unlikely, but the findings do illustrate levels of pharmaceuticals in the environment.

Wastewater treatment plants were not initially designed to treat pharmaceuticals and are unable to treat some pharmaceuticals. So tackling this complex issue requires “up-stream” actions.  

The One Health Breakthrough Partnership (OHBP), which was involved in the design and oversight of this study, is a cross-sector initiative bringing together key stakeholders to develop and implement sustainable interventions in healthcare.

NHS Highland lead and OHBP co-founder, Sharon Pfleger, Consultant in Pharmaceutical Public Health, says: “It is important to try to prevent or reduce the impact of pollution by medicines as much as possible rather than trying to deal with the problem.

“That’s why the OHBP is taking an “up-stream” public health approach, ensuring that prescribers and the public understand that medicines do pollute our waters and how they can help, developing guidance for prescribers on more eco-friendly choices of medicines, promoting the use of green and blue spaces to help physical and mental health instead of using medicines and ensuring that people know how to correctly dispose of unused or unwanted medicines.”

The OHBP (Scottish Water, SEPA, NHS Highland, and the Environmental Research Institute-University of the Highlands and Islands) is committed to working with partners to develop solutions and progress the recommendations put forward in this report. Together the OHBP aims to drive research and innovation and influence policy in Scotland to achieve optimal health for people, animals, plants and the environment.

This study recommends that further environmental research be done for areas of the country where few data are available, and, similarly, for groundwater, lochs, and coastal and estuarine waters.

The study will be used by researchers, environmental regulators, the water industry, and the health service as a baseline to assess whether, and to what extent, future interventions and OHBP activities help to reduce pharmaceutical pollution.

The report and its appendices are available on CREW’s website

SEPA engages innovative modelling techniques to help Scotland better prepare for future increased flooding

SEPA is introducing new flood hazard mapping which will provide a clearer indication of surface water (also known as pluvial) flood risk now and in future. This will enable people, communities and businesses to better understand the risks and act to reduce the impact of surface water flooding.

The introduction of the new mapping will support delivery of SEPA’s Flooding Services Strategy being published in autumn 2021. It is key to the organisation’s vision of a society that is resilient to flooding and adapted to future climate change.

Surface water flood maps have been publicly available on the SEPA website since 2013, however, our 2018 National Flood Risk Assessment identified surface water as the largest source of flood risk affecting Scotland.

The mapping, which will be provided by JBA Consulting, will provide a complete refresh of our national surface water flood maps using the most up-to-date data on current and future rainfall, improving our flood map products to provide more confident results of where surface water flooding is likely.

The project will involve an initial pilot stage which will trial high resolution modelling and mapping methodologies, and a range of model assumptions and parameters across four pilot areas: Aberdeen, Glasgow, Peebles and Torridon. When the pilot stage ends early next year, an agreed approach will be rolled out across Scotland and the mapping will be produced in a sequence of 11 geographical phases.

Vincent Fitzsimons, Head of Hydrology & Flooding at SEPA, said: “The latest landmark climate change report from the IPCC is a clarion call for what the world already knows, that the climate emergency is accelerating. SEPA is urgently responding to ensure Scotland’s communities and businesses are resilient to flooding and adapted to future climate change impacts.

“A major part of this is to ensure information on flood risk is available to those who need it most. This means we need to continually improve the quality and availability of our flood map products, with a particular focus on surface water flood risk.

“Our significant investment in this project to improve surface water flood hazard mapping for Scotland is one step on the journey to ensure people and businesses are resilient to flooding and adapted to our changing environment.”

David Bassett, Director, JBA Consulting said: “We’re delighted to be appointed by SEPA to complete the national surface water flood hazard mapping for Scotland. We have been working on flood risk in Scotland for over 20 years and in that time our technical experts have accrued excellent knowledge of the risk and the issues, and the structures in place to help.

“Scottish Government surface water management planning guidance issued in 2018, highlighted that 23% of annual average damages associated with flooding across Scotland were forecast to come from surface water flooding. Of the 27,500 homes predicted to be at risk, 39% are in areas of higher social vulnerability.

“Climate change was also predicted to increase the numbers of homes and businesses at risk by 45%.

“With flood events never far from the news headlines, recent surface water flooding in Edinburgh showed the vulnerability of many urban areas. The role of consistent 2m grid surface water flood risk mapping across Scotland is more important than ever, and we’re pleased to lead on this national mapping project.”

Support to protect Scotland’s coastlines

New maps forecast impacts of climate change

An estimated £1.2 billion of Scotland’s buildings, transport infrastructure, cultural and natural heritage may be at risk of coastal erosion by 2050, according to new research.

As part of the Scottish Government’s Dynamic Coast project, funded by the Centre of Expertise for Waters (CREW), the University of Glasgow has developed new maps to serve as a coastal change adaptation planning tool for government, agencies, local authorities as well as communities and businesses.

With evidence from the maps, the government is encouraging local authorities to prepare coastal adaptation plans, supported by an additional £12 million of investment. In recognition of the heightened landscape of climate-related risk in Scotland, Dynamic Coast will form part of a wider national programme to build resilience.

The Scottish Government has also already announced plans to host a National Climate Resilience Summit in the Autumn, to raise awareness and build momentum across the public and private sectors in advance of COP26.

Net Zero Secretary Michael Matheson visited the sand dunes in Montrose, which help protect the town from coastal flooding and erosion.

Mr Matheson said: “I welcome the publication of Dynamic Coast 2 which shows us that at least £20 billion of assets, road, rail and residential property, lie within 50 metres of our coast. With nature protecting some £14.5 billion of these assets, maintaining our natural coastal defences must be a key part of our resilience and adaptation strategies.  

“We are already locked into future sea level rise and therefore we must plan for the worst case scenario on the coast. Modelling suggests however that we will see erosion influencing the majority of shores this decade. The Dynamic Coast maps will be a valuable tool in our fight against climate change, and we are now preparing guidance to help local authorities produce new adaptation plans.

“Here in Montrose, up to 80 metres of beach has eroded since the 1980s and a further 120 metres could erode over the next 40 years, breaching the main dune ridge. Angus Council is working with local stakeholders, including Montrose Port Authority and Montrose Golf links to identify the most sustainable solution for the town.

“COP26 in Glasgow represents the world’s best chance – perhaps one of our last chances – to avert the worst impacts of climate change. However, even in the best case scenario for global emissions reductions it is clear that we must also be preparing for the impacts that are already locked in.

“By doing this we can deliver on the principles of the Paris Agreement with lasting action to secure a net zero and climate resilient future in a way that is fair and just for everyone.”

NatureScot Climate Change Director Nick Halfhide said: “This latest research from Dynamic Coast highlights that natural defences, such as sand dunes, protect three times the value of roads, railways and buildings than sea walls do.

“That’s why we must invest in Scotland’s nature. Nature based solutions are essential in our response to the twin crises of nature loss and climate change, and with COP26 coming to Glasgow in the coming months, there’s no better time for Scotland to take ambitious action.”

Director of the Centre of Expertise for Waters (CREW) Professor Bob Ferrier said: “CREW is delighted to have supported the development and launch of the Dynamic Coast project.

“This nationally significant research will assist decision-makers and others to understand how Scotland’s coastal assets need to adapt to the pressures of climate change and improve our collective resilience in the face of this challenge.”

Scottish partnership identifies Covid-19 RNA traces through waste water monitoring

Scientists at the Scottish Environment Protection Agency’s (SEPA) have successfully pinpointed fragments of coronavirus’ ribonucleic acid (RNA) in local waste water samples across the country.

SEPA was among the first European agencies to begin this exploratory work back in May, with the backing of Scottish Government and Public Health Scotland (PHS), alongside Scottish Water, CREW (Centre of expertise for Waters) and academic partners from the University of Edinburgh’s Roslin Institute and Heriot Watt University.

The aim was to detect fragments of the virus’ RNA – a genetic footprint which can be measured in waste water even after the virus has begun to breakdown. The World Health Organization has said there is currently no evidence that coronavirus has been transmitted via sewerage systems.

Analysis on samples from across Scotland has now identified traces in waste water from 12 health board areas. The results have been shared with PHS and areas with positive RNA findings are consistent with the areas known to have confirmed Covid-19 cases.

One such example is Aberdeen, where SEPA’s analysis demonstrates how the prevalence of the virus in waste water samples is mirroring cases in the population. At the beginning of August, SEPA analysed a sample from the Aberdeen area which was positive for Covid-19 RNA. This was consistent with an increase in positive cases in the areas.

On SEPA’s request Scottish Water increased the sampling rate to four times a week to provide more information, and over the following three weeks there was a gradual decline to below the level that concentrations can be detected with sufficient accuracy. Sample results remained at the same level until the end of September when they began to rise again, reflecting PHS data on known cases.

Sample results across the rest of Scotland, including in the Central Belt, continue to be consistent with PHS information on cases in the community. SEPA has made data available for all samples analysed at https://informatics.sepa.org.uk/RNAmonitoring/

Since May SEPA and partners at the Roslin Institute have been refining analysis methods to lower the concentration of RNA that can be reliably detected.

Testing is conducted on incoming waste water samples collected by Scottish Water and its operators at 28 public waste water treatment works across the country, covering all 14 NHS Scotland health board areas. Most locations are tested weekly, but this can be increased when local outbreaks are apparent.

Samples are representative of waste water from between 40-50 percent of the Scottish population and, in combination with community testing, are helping Scotland understand the prevalence and distribution of the virus.

SEPA continues to work with academia and public health officials to understand how this monitoring can be best used to support Scotland’s response to the pandemic.

Terry A’Hearn, SEPA CEO, said: “As Scotland’s environmental watchdog and as a public agency, we remain proud to be playing our part in the national effort to combat coronavirus.

“Our scientific capabilities and expertise in designing and implementing monitoring networks made us ideally suited to delivering this trial and the results we are seeing demonstrate its scientific validity.

“Central to the delivery of this project has been our partnership working Scottish Water and the University of Edinburgh’s Roslin Institute, and we will continue to work closely together to refine our techniques and understanding.

“We’ve received support from across the public sector, agencies and institutions – including a donation of specialist kit from Science and Advice for Scottish Agriculture – demonstrating how Scotland is coming together to find ways of tackling this virus.”

SEPA is also assisting UK government scientific advisors, who are engaging with the research community to investigate how waste water monitoring can be used to track the transmission of coronavirus.

Environment Secretary Roseanna Cunningham said: “In order to manage the coronavirus pandemic, it is vital that we continue to develop our understanding of it, and I welcome this UK-wide programme of research and the development of waste water monitoring to help build our knowledge base.

“SEPA and Scottish Water have translated this experimental programme into a comprehensive, Scotland-wide monitoring network. The early data is already providing our public health experts with new information, which complements the wider population testing programme to give a more robust picture of the prevalence of Covid disease in Scotland.

“I look forward to the programme providing further, valuable data over the coming months to support our fight against the pandemic.”

Scientists at The Roslin Institute have been working with Scottish Water and SEPA to develop robust methodologies for detecting and measuring SARS-CoV-2 genetic material in wastewater.

Funding from the Centre of Expertise for Waters (CREW), which is supported by Scottish Government, has allowed scientists in Scotland to work with academic colleagues across the UK to keep pace with international developments in the rapidly expanding field of wastewater epidemiology.

SEPA’s response to the COVID-19 pandemic can be found at coronavirus.sepa.org.uk.

Climate change may put Scottish private water supplies at risk of running dry

The latest UK climate projections show a trend towards drier and warmer summers, with the west of Scotland set to become wetter and the east drier, plus more frequent instances of heavy rainfall.

New research by the James Hutton Institute shows that these changing weather patterns are likely to make private water supplies across Scotland more vulnerable to droughts, a major issue considering that private supplies provide drinking water to 4% of Scotland’s population, and to many more through businesses and tourist facilities.

Summer 2018 was unusually dry and warm and many private water supplies ran dry leaving people needing assistance from their local authority. Scotland’s Centre of Expertise for Waters (CREW) responded on behalf of the Scottish Government by commissioning a report into how climate change is likely to impact the resilience of private water supplies in the future, focusing on water scarcity.

If, as projected, drier and warmer summers are more frequent, private water supplies will be increasingly vulnerable to water shortages. North east Scotland is forecast to experience the largest increase in water shortages, and it is also where there is the highest density of private water supplies. 

Dr Mike Rivington, project lead and co-author of the report, said: “About half of Scotland’s private water supplies are estimated to be within areas of increased vulnerability between now and 2050.

“Future levels of vulnerability are due to reduced water quantity availability combining with specific catchment scale water use, such as for agriculture. Across Scotland this will vary in space and time due to changes in precipitation and temperature that affects the overall water balance.”

Co-author Dr Ioanna Akoumianaki highlights the need for a better understanding of water storage at landscape scales and the potential impacts of dry weather on springs, rivers, lochs and the water table to help assess the risk of private water supplies drying up.

She added: “Awareness of that risk and collaboration between users, local authorities and experts will be key to addressing the challenges and achieving rural supplies that are resilient to changes in the climate.”

Environment and Climate Change Secretary, Roseanna Cunningham, said: “This important research provides more evidence that climate change is having a growing impact on our natural environment and resources – and on our everyday lives.

“The prolonged dry weather in 2018, and again this spring, shows that Scotland is not immune to water scarcity. Events like this will only become more frequent, which is why it is essential that we continue to build on our understanding of climate change effects with research like this. This will help develop our critical adaptation work and support of communities across the country.”

But it’s not just changes in our climate that present potential problems. CREW recently published a study led by Glasgow Caledonian University showing that private water supplies play a vital role in rural economies in Scotland, with many micro- and small businesses relying on them. Reliance on private supplies makes communities in remote areas of rural Scotland potentially less resilient, economically and otherwise.

The report argues that it costs more – directly and indirectly – to access and maintain private supplies and issues with water quality can be detrimental to businesses, further affecting the fragile, interdependent nature of small rural communities.

Whilst tourism is widely regarded as a welcome economic opportunity in rural areas, the sudden rise in water demand, such as along the heavily promoted North Coast 500 tourist route, was recognised as an issue requiring urgent attention. Better regulatory oversight and support and enhanced communication between relevant agencies both locally and nationally is essential so rural businesses and communities can continue to grow.

Prof Bob Ferrier, Director of CREW commented: “Scotland’s climate is changing, and it is important to understand the impacts of that change on our society. Reliance on private water supplies puts users increasingly at risk of both the impacts of climate change and the low resilience to economic impacts.”

Both reports are available for consultation from the CREW website: https://www.crew.ac.uk/publications.

Funded by the Scottish Government, CREW is a partnership between the James Hutton Institute and Scottish higher education and research institutes. For details see www.crew.ac.uk.